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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858199.1_cds_XP_016513787.1_26297
CDS Infomation

[gene=LOC107830673] [db_xref=GeneID:107830673] [protein=aspartic proteinase-like] [protein_id=XP_016513787.1] [location=join(2946..3314,3425..3485,4180..4274,4368..4480,4676..4844,4923..4962,5079..5143,5660..5773,5906..5970,6074..6227,6294..6413,6818..6906,7004..7088)] [gbkey=CDS]
Sequence

ATGGGAGCAAAATCTTTTCTTGTCGCCTTTTTCCTTTCATTGCTGTTATTTCCTTTGGCC
TTCTGTACATCAAATGATGGCTTGGTTAGAATTGGTTTAAAAAAGATAAAATTCGATCAA
AACAACCGACTTGCTGCACGCGTCGAGTCCAAGGAGGGGGAGGCTTTGAGGGCCTCTTTT
AGGAAGTATAATAATCTCCGTGGTAATCTTGGGGCCTCTGAGGATACAGACATTGTAGCA
CTGAAGAATTATATGGATGCTCAGTACTTTGGGGAGATTGGTATAGGCAGTCCCCCTCAG
AAGTTCACTGTCATCTTTGATACTGGTAGCTCTAATTTGTGGGTGCCTTCATCAAAGTGC
TACTTCTCAGTTCCATGCCTTTTCCATTCTAAGTACAAGTCAAGCCAATCAAGCACTTAT
AAGAAAAATGGGAAGTCTGCTGCCATACGTTATGGTACTGGAGCAATATCTGGATTTTTC
AGTCAAGATAGCGTTAAAGTTGGTGATCTGGTTGTGAAAAATCAGGAGTTCATCGAGGCA
ACCAGAGAACCCAGTGTAACTTTTTTGGTAGCCAAGTTTGATGGTATATTGGGTCTTGGT
TTCCAGGAGATTTCTGTTGGAAATGCTGTACCAGTATGGTACAACATGGTCAAACAGGGT
CTTGTCAAGGAGCCTGTCTTCTCATTTTGGCTCAACCGAAATACAGAGGAAGATGAAGGG
GGCGAAATTGTGTTTGGTGGGGTTGATCCTAACCACTATAAGGGAAAGCACACTTATGTC
CCAGTCACACGGAAAGGTTATTGGCAGTTTGACATGGGTGATGTTCTGATTGATGGTCAA
GCTACTGGTTACTGTGACAATGGATGTTCTGCAATAGCGGATTCTGGGACTTCTCTCTTG
GCTGGTCCAACGACTGTAGTCACTATGATTAATCATGCCATTGGCGCCTCGGGGGTTGTA
AGCCAACAATGTAAAGCTGTTGTTGAACAGTATGGACAAACAATAATGGATATGCTTTTA
GCAGAGGCACATCCAAAGAAGATCTGCTCACAGGTTGGGTTATGCACCTTTGATGGAACT
CGTGGCGTTAGTATGGGCATTGAGAGTGTTGTGGATGAGAATGCTGGCAAATCTTCAGGA
CTGCATGATGCTATGTGCTCCGCTTGTGAAATGGCGGTTGTCTGGATGCAGAACCAACTT
AGACAGAACCAGACCCAAGAACGCATCTTGAACTATGTGAATGAGCTTTGCGAGCGACTA
CCAAGCCCAATGGGACAATCAGCTGTTGATTGTGGAAAGCTTTCTGGCATGCCTAGTGTT
TCCTTCACAATTGGTGGCAGAACATTTGACCTCTCTCCTGAGGAGTACATACTCAAGGTG
GGCGAGGGTCCTGCTGCACAATGTATTAGTGGCTTCATTGCCTTGGATGTTCCTCCACCC
CGTGGACCTCTCTGGATCTTGGGGGATGTTTTCATGGGTCGATATCACACCGTCTTTGAT
TCTGGAAAACTTAGAGTTGGATTTGCAGAAGCAGCTTAG

Peptide Sequence

PEP ID

XP_016513787.1
PEP Infomation

PREDICTED: aspartic proteinase-like [Nicotiana tabacum]
Sequence

MGAKSFLVAFFLSLLLFPLAFCTSNDGLVRIGLKKIKFDQNNRLAARVESKEGEALRASF
RKYNNLRGNLGASEDTDIVALKNYMDAQYFGEIGIGSPPQKFTVIFDTGSSNLWVPSSKC
YFSVPCLFHSKYKSSQSSTYKKNGKSAAIRYGTGAISGFFSQDSVKVGDLVVKNQEFIEA
TREPSVTFLVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLVKEPVFSFWLNRNTEEDEG
GEIVFGGVDPNHYKGKHTYVPVTRKGYWQFDMGDVLIDGQATGYCDNGCSAIADSGTSLL
AGPTTVVTMINHAIGASGVVSQQCKAVVEQYGQTIMDMLLAEAHPKKICSQVGLCTFDGT
RGVSMGIESVVDENAGKSSGLHDAMCSACEMAVVWMQNQLRQNQTQERILNYVNELCERL
PSPMGQSAVDCGKLSGMPSVSFTIGGRTFDLSPEEYILKVGEGPAAQCISGFIALDVPPP
RGPLWILGDVFMGRYHTVFDSGKLRVGFAEAA

Transcript Sequence

Gene sequence data has not been registered.